| MirGeneDB ID | Tur-Mir-3931 |
|---|
| Family name |
MIR-3931 (all species) |
|---|
| Seed |
ACUUUGA |
|---|
| Species |
Two-spotted spider mite (Tetranychus urticae) |
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| MiRBase ID |
tur-mir-3931
|
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| Paralogues |
|
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| Orthologues |
Csc-Mir-3931-P8a
Csc-Mir-3931-P8b
Isc-Mir-3931
Lpo-Mir-3931-P1
Lpo-Mir-3931-P2
Lpo-Mir-3931-P3
Lpo-Mir-3931-P4
Lpo-Mir-3931-P5
Lpo-Mir-3931-P6
Lpo-Mir-3931-P7
|
|---|
| Node of Origin (locus) |
Chelicerata
|
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| Node of Origin (family) |
Chelicerata
|
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Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587302.1: 3048006-3048067 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UAUUUCAAUAUUUUUGCGUGGAUUGCAAUGAUUUGUACCGAUUCAUUGAUAGGUUAGAAGAUUGAUUUACUACUUUGAGUCGGUACGAAUCAUAUCAUACAUGCUUAAUCAUCGUAAAAUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAUUUCAAUAUUUUUGC----- -| UGCA UUGA GUUAGAAG
GUG GAU AUGAUUUGUACCGAUUCA UAG \
CAU CUA UACUAAGCAUGGCUGAGU AUC A
UUUAAAAUGCUACUAAUUCGUA A^ ---- UUC- AUUUAGUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Tur-Mir-3931_5p* |
| mirBase accession | MIMAT0023090 |
|---|
| Sequence |
0- AUUUGUACCGAUUCAUUGAUAGG -23
Get sequence
|
|---|
| Mature sequence |
Tur-Mir-3931_3p |
| mirBase accession | MIMAT0023091 |
|---|
| Sequence |
40- UACUUUGAGUCGGUACGAAUCA -62
Get sequence
|
|---|
