MirGeneDB 3.0

MirGeneDB ID

Mmu-Mir-506-P11b1

Family name MIR-506 (all species)
Seed AUCAGGG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-465b-1
Paralogues Mmu-Mir-506-P2b  Mmu-Mir-506-P4  Mmu-Mir-506-P11a  Mmu-Mir-506-P11b2  Mmu-Mir-506-P11c1  Mmu-Mir-506-P11c2  Mmu-Mir-506-P11d  Mmu-Mir-506-P12  Mmu-Mir-506-P13  Mmu-Mir-506-P14  Mmu-Mir-506-P15  Mmu-Mir-506-P16  Mmu-Mir-506-P17  Mmu-Mir-506-P18  Mmu-Mir-506-P19  Mmu-Mir-506-P20  Mmu-Mir-506-P21  Mmu-Mir-506-P22  Mmu-Mir-506-P23  Mmu-Mir-506-P24 
Orthologues Laf-Mir-506  Rno-Mir-506-P11 
Node of Origin (locus) M. musculus
Node of Origin (family) Eutheria
Genome context
(mm10)
chrX: 66835774-66835832 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P11b1)
Mir-506-P20 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P19 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P17 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P16 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P15 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P14 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P13 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P12 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P11d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P11c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P11b2 chrX: 66829212-66829270 [-] UCSC Ensembl
Mir-506-P11c1 chrX: 66832527-66832587 [-] UCSC Ensembl
Mir-506-P11b1 chrX: 66835774-66835832 [-] UCSC Ensembl
Mir-506-P11a chrX: 66839063-66839121 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUCCUUAAAGGCUUUGUAUGCAAUGCCCUAUUUAGAAUGGUGCUGAUCUGAUGAAAUAAAAAAUUGAUCAGGGCCUUUCUAAGUAGAGUAAGGCUUACCAACUAUACAUUUAAUAUG
Get precursor sequence
Structure
        10          20        30        40        50         
AUCUCCUUAAAGGCUUU--|  U  AA   C          U   G      UGAUGAAA 
                   GUA GC  UGC CUAUUUAGAA GGU CUGAUC        \
                   CAU CG  AUG GAUGAAUCUU CCG GACUAG        U
GUAUAAUUUACAUAUCAAC^  U  GA   A          U   G      UUAAAAAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Star sequence

Mmu-Mir-506-P11b1_5p*

mirBase accessionMIMAT0004871
Sequence
0- UAUUUAGAAUGGUGCUGAUCUG -22
Get sequence
Proposed targets microrna.org: MIMAT0004871
TargetScanVert: mmu-miR-465b-5p
miRDB: MIMAT0004871
Mature sequence

Mmu-Mir-506-P11b1_3p

mirBase accessionMIMAT0004872
Sequence
37- GAUCAGGGCCUUUCUAAGUAGA -59
Get sequence
Proposed targets microrna.org: MIMAT0004872
TargetScanVert: mmu-miR-465b-3p
miRDB: MIMAT0004872