Mir-506-P11c1

MirGeneDB ID

Mmu-Mir-506-P11c1

Family name

MIR-506 (all species)

Seed

AUCAGGG

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-465c-1

Paralogues

Mmu-Mir-506-P2b Mmu-Mir-506-P4 Mmu-Mir-506-P11a Mmu-Mir-506-P11b1 Mmu-Mir-506-P11b2 Mmu-Mir-506-P11c2 Mmu-Mir-506-P11d Mmu-Mir-506-P12 Mmu-Mir-506-P13 Mmu-Mir-506-P14 Mmu-Mir-506-P15 Mmu-Mir-506-P16 Mmu-Mir-506-P17 Mmu-Mir-506-P18 Mmu-Mir-506-P19 Mmu-Mir-506-P20 Mmu-Mir-506-P21 Mmu-Mir-506-P22 Mmu-Mir-506-P23 Mmu-Mir-506-P24

Orthologues

Laf-Mir-506 Rno-Mir-506-P11

Node of Origin (locus)

M. musculus

Node of Origin (family)

Eutheria

Genome context
(mm10)

chrX: 66832527-66832587 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P11c1)

Mir-506-P20 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P19 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P17 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P16 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P15 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P14 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P13 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P12 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P11d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P11c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P11b2 chrX: 66829212-66829270 [-] UCSC Ensembl
Mir-506-P11c1 chrX: 66832527-66832587 [-] UCSC Ensembl
Mir-506-P11b1 chrX: 66835774-66835832 [-] UCSC Ensembl
Mir-506-P11a chrX: 66839063-66839121 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUUUCAUUACAGGCUUUGUAUGCAAUGCCCUAUUUAGAAUGGCGCUGAUCUGAUGAAUAAAAAAAAAAUGAUCAGGGCCUUUCUAAGUAGAGUAAGGCUUACCAACUUCUACGUUUAAUAU

Get precursor sequence

Structure

        10          20        30        40        50          
AUUUCAUUACAGGCUUU--|  U  AA   C          U   G      UGAUGAAUA 
                   GUA GC  UGC CUAUUUAGAA GGC CUGAUC         \
                   CAU CG  AUG GAUGAAUCUU CCG GACUAG         A
UAUAAUUUGCAUCUUCAAC^  U  GA   A          U   G      UAAAAAAAA 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Es	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Star sequence

Mmu-Mir-506-P11c1_5p*

mirBase accession

MIMAT0004873

Sequence

0- UAUUUAGAAUGGCGCUGAUCUG -22

Get sequence

Proposed targets

microrna.org: MIMAT0004873
TargetScanVert: mmu-miR-465c-5p
miRDB: MIMAT0004873

Mature sequence

Mmu-Mir-506-P11c1_3p

mirBase accession

MIMAT0004874

Sequence

39- GAUCAGGGCCUUUCUAAGUAGA -61

Get sequence

Proposed targets

microrna.org: MIMAT0004874
TargetScanVert: mmu-miR-465c-3p
miRDB: MIMAT0004874