Mir-506-P21

MirGeneDB ID

Mmu-Mir-506-P21

Family name

MIR-506 (all species)

Seed

AACUGCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-883a

Paralogues

Mmu-Mir-506-P2b Mmu-Mir-506-P4 Mmu-Mir-506-P11a Mmu-Mir-506-P11b1 Mmu-Mir-506-P11b2 Mmu-Mir-506-P11c1 Mmu-Mir-506-P11c2 Mmu-Mir-506-P11d Mmu-Mir-506-P12 Mmu-Mir-506-P13 Mmu-Mir-506-P14 Mmu-Mir-506-P15 Mmu-Mir-506-P16 Mmu-Mir-506-P17 Mmu-Mir-506-P18 Mmu-Mir-506-P19 Mmu-Mir-506-P20 Mmu-Mir-506-P22 Mmu-Mir-506-P23 Mmu-Mir-506-P24

Orthologues

Laf-Mir-506 Rno-Mir-506-P21

Node of Origin (locus)

Muridae

Node of Origin (family)

Eutheria

Genome context
(mm10)

chrX: 66780767-66780824 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P21)

Mir-506-P24 chrX: 66776760-66776815 [-] UCSC Ensembl
Mir-506-P23 chrX: 66777266-66777322 [-] UCSC Ensembl
Mir-506-P22 chrX: 66780376-66780432 [-] UCSC Ensembl
Mir-506-P21 chrX: 66780767-66780824 [-] UCSC Ensembl
Mir-506-P20 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P19 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P17 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P16 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P15 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P14 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P13 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P12 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P11d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P11c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P11b2 chrX: 66829212-66829270 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAUAAUAAUAAUAAUUCGUGUGCACUAUAAUGCUGAGAGAAGUAGCAGUUACUUUAUUCUAUAAGUAACUGCAACAGCUCUCAGUAUUGUAAGGCUCAACAAACGCAGGGAUGGUAGC

Get precursor sequence

Structure

        10         20         30        40        50        
GAUAAUAAUAAUAAUUC-  GU-| AC              AA  A         UUAU 
                  GU   GC  UAUAAUGCUGAGAG  GU GCAGUUACU    U
                  CA   CG  AUGUUAUGACUCUC  CA CGUCAAUGA    C
CGAUGGUAGGGACGCAAA  ACU^ GA              GA  A         AUAU 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Star sequence

Mmu-Mir-506-P21_5p*

mirBase accession

MIMAT0004848

Sequence

0- UGCUGAGAGAAGUAGCAGUUACU -23

Get sequence

Proposed targets

microrna.org: MIMAT0004848
TargetScanVert: mmu-miR-883a-5p
miRDB: MIMAT0004848

Mature sequence

Mmu-Mir-506-P21_3p

mirBase accession

MIMAT0004849

Sequence

35- UAACUGCAACAGCUCUCAGUAUU -58

Get sequence

Proposed targets

microrna.org: MIMAT0004849
TargetScanVert: mmu-miR-883a-3p
miRDB: MIMAT0004849