Mir-506-P26

MirGeneDB ID

Mmu-Mir-506-P26

Family name

MIR-506 (all species)

Seed

AACUGCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-883a

Paralogues

Mmu-Mir-506-P1 Mmu-Mir-506-P2 Mmu-Mir-506-P7 Mmu-Mir-506-P14 Mmu-Mir-506-P15a Mmu-Mir-506-P15b1 Mmu-Mir-506-P15b2 Mmu-Mir-506-P15c1 Mmu-Mir-506-P15c2 Mmu-Mir-506-P15d Mmu-Mir-506-P16 Mmu-Mir-506-P17 Mmu-Mir-506-P18 Mmu-Mir-506-P19 Mmu-Mir-506-P20 Mmu-Mir-506-P21 Mmu-Mir-506-P22 Mmu-Mir-506-P23 Mmu-Mir-506-P24 Mmu-Mir-506-P25 Mmu-Mir-506-P27

Orthologues

Rno-Mir-506-P26

Node of Origin (locus)

Muridae

Node of Origin (family)

Eutheria

Genome context
(mm10)

chrX: 66780767-66780824 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P26)

Mir-506-P20 chrX: 66776760-66776815 [-] UCSC Ensembl
Mir-506-P21 chrX: 66777266-66777322 [-] UCSC Ensembl
Mir-506-P19 chrX: 66780376-66780432 [-] UCSC Ensembl
Mir-506-P26 chrX: 66780767-66780824 [-] UCSC Ensembl
Mir-506-P27 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P17 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P14 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P24 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P23 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P25 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P22 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P16 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P15d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P15c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P15b2 chrX: 66829212-66829270 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAUAAUAAUAAUAAUUCGUGUGCACUAUAAUGCUGAGAGAAGUAGCAGUUACUUUAUUCUAUAAGUAACUGCAACAGCUCUCAGUAUUGUAAGGCUCAACAAACGCAGGGAUGGUAGC

Get precursor sequence

Structure

        10         20         30        40        50        
GAUAAUAAUAAUAAUUC-  GU-| AC              AA  A         UUAU 
                  GU   GC  UAUAAUGCUGAGAG  GU GCAGUUACU    U
                  CA   CG  AUGUUAUGACUCUC  CA CGUCAAUGA    C
CGAUGGUAGGGACGCAAA  ACU^ GA              GA  A         AUAU 
      110       100        90        80        70        60

Deep sequencing

3' NTU

Motifs

Tissue expression

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Star sequence

Mmu-Mir-506-P26_5p*

mirBase accession

MIMAT0004848

Sequence

0- UGCUGAGAGAAGUAGCAGUUACU -23

Get sequence

Proposed targets

microrna.org: MIMAT0004848
TargetScanVert: mmu-miR-883a-5p
miRDB: MIMAT0004848

Mature sequence

Mmu-Mir-506-P26_3p

mirBase accession

MIMAT0004849

Sequence

35- UAACUGCAACAGCUCUCAGUAUU -58

Get sequence

Proposed targets

microrna.org: MIMAT0004849
TargetScanVert: mmu-miR-883a-3p
miRDB: MIMAT0004849