Mir-506-P1

MirGeneDB ID

Mmu-Mir-506-P1

Family name

MIR-506 (all species)

Seed

ACUCAGU

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-201

Paralogues

Mmu-Mir-506-P2 Mmu-Mir-506-P7 Mmu-Mir-506-P14 Mmu-Mir-506-P15a Mmu-Mir-506-P15b1 Mmu-Mir-506-P15b2 Mmu-Mir-506-P15c1 Mmu-Mir-506-P15c2 Mmu-Mir-506-P15d Mmu-Mir-506-P16 Mmu-Mir-506-P17 Mmu-Mir-506-P18 Mmu-Mir-506-P19 Mmu-Mir-506-P20 Mmu-Mir-506-P21 Mmu-Mir-506-P22 Mmu-Mir-506-P23 Mmu-Mir-506-P24 Mmu-Mir-506-P25 Mmu-Mir-506-P26 Mmu-Mir-506-P27

Orthologues

Bta-Mir-506-P1 Cfa-Mir-506-P1 Cpo-Mir-506-o1 Cpo-Mir-506-P1 Dno-Mir-506-P1 Hsa-Mir-506-P1 Mml-Mir-506-P1 Ocu-Mir-506-P1 Rno-Mir-506-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(mm10)

chrX: 67988099-67988156 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P1)

Mir-506-P1 chrX: 67988099-67988156 [-] UCSC Ensembl
Mir-506-P2 chrX: 67988383-67988440 [-] UCSC Ensembl
Mir-506-P7 chrX: 68010114-68010170 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUACUUUCAAUGAUGCUGUGUACAGUACCUUACUCAGUAAGGCAUUGUUCUUCUAUAUUAAUAAAUGAACAGUGCCUUUCUGUGUAGGGUAAUGUGCAACAUGGACAACAUUUGUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
CUACUUUCAAUGAUGCUG--|     G        U   U            UUCUAUA 
                    UGUACA UACCUUAC CAG AAGGCAUUGUUC       U
                    ACGUGU AUGGGAUG GUC UUCCGUGACAAG       U
UGGUGUUUACAACAGGUACA^     A        U   U            UAAAUAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

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Mature sequence

Mmu-Mir-506-P1_5p

mirBase accession

MIMAT0000234

Sequence

0- UACUCAGUAAGGCAUUGUUCUUC -23

Get sequence

Proposed targets

microrna.org: MIMAT0000234
TargetScanVert: mmu-miR-201-5p
miRDB: MIMAT0000234

Star sequence

Mmu-Mir-506-P1_3p*

mirBase accession

MIMAT0017001

Sequence

35- UGAACAGUGCCUUUCUGUGUAGG -58

Get sequence

Proposed targets

TargetScanVert: mmu-miR-201-3p
miRDB: MIMAT0017001