Mir-506-P27

MirGeneDB ID

Mmu-Mir-506-P27

Family name

MIR-506 (all species)

Seed

AACUGCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-883b

Paralogues

Mmu-Mir-506-P1 Mmu-Mir-506-P2 Mmu-Mir-506-P7 Mmu-Mir-506-P14 Mmu-Mir-506-P15a Mmu-Mir-506-P15b1 Mmu-Mir-506-P15b2 Mmu-Mir-506-P15c1 Mmu-Mir-506-P15c2 Mmu-Mir-506-P15d Mmu-Mir-506-P16 Mmu-Mir-506-P17 Mmu-Mir-506-P18 Mmu-Mir-506-P19 Mmu-Mir-506-P20 Mmu-Mir-506-P21 Mmu-Mir-506-P22 Mmu-Mir-506-P23 Mmu-Mir-506-P24 Mmu-Mir-506-P25 Mmu-Mir-506-P26

Orthologues

Node of Origin (locus)

M. musculus

Node of Origin (family)

Eutheria

Genome context
(mm10)

chrX: 66789899-66789957 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P27)

Mir-506-P20 chrX: 66776760-66776815 [-] UCSC Ensembl
Mir-506-P21 chrX: 66777266-66777322 [-] UCSC Ensembl
Mir-506-P19 chrX: 66780376-66780432 [-] UCSC Ensembl
Mir-506-P26 chrX: 66780767-66780824 [-] UCSC Ensembl
Mir-506-P27 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P17 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P14 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P24 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P23 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P25 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P22 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P16 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P15d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P15c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P15b2 chrX: 66829212-66829270 [-] UCSC Ensembl
Mir-506-P15c1 chrX: 66832527-66832587 [-] UCSC Ensembl
Mir-506-P15b1 chrX: 66835774-66835832 [-] UCSC Ensembl
Mir-506-P15a chrX: 66839063-66839121 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCUCACUCAAUAUUCUGUGUGCAAUGCAUUACUGAGAAUGGGUAGCAGUCACUUUGUACUAUGAGUAACUGCAACAUCUCUCAGUAUUGUAAGGUUCAACAAAUACAAGGGUGGUAGC

Get precursor sequence

Structure

        10         20         30        40        50         
UCCUCACUCAAUAUUCU-  GU-| AA    U        AUGG  A     C   UUGU 
                  GU   GC  UGCA UACUGAGA    GU GCAGU ACU    A
                  CA   UG  AUGU AUGACUCU    CA CGUCA UGA    C
CGAUGGUGGGAACAUAAA  ACU^ GA    U        CUA-  A     A   GUAU 
       110       100        90        80         70        60

Deep sequencing

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

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Star sequence

Mmu-Mir-506-P27_5p*

mirBase accession

MIMAT0004850

Sequence

0- UACUGAGAAUGGGUAGCAGUCACU -24

Get sequence

Proposed targets

microrna.org: MIMAT0004850
TargetScanVert: mmu-miR-883b-5p
miRDB: MIMAT0004850

Mature sequence

Mmu-Mir-506-P27_3p

mirBase accession

MIMAT0004851

Sequence

36- UAACUGCAACAUCUCUCAGUAUU -59

Get sequence

Proposed targets

microrna.org: MIMAT0004851
TargetScanVert: mmu-miR-883b-3p
miRDB: MIMAT0004851