MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-376-P2

Family name MIR-376 (all species)
Seed ACAUAGA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-376-P1  Pab-Mir-376-P3  Pab-Mir-376-P4  Pab-Mir-376-P5 
Orthologues Bta-Mir-376-P2  Cfa-Mir-376-P2  Cja-Mir-376-P2  Cpo-Mir-376-P2  Dno-Mir-376-P2  Eca-Mir-376-P2  Ete-Mir-376-P2  Hsa-Mir-376-P2  Laf-Mir-376-P2  Mml-Mir-376-P2  Mmr-Mir-376-P2  Mmu-Mir-376-P2  Ocu-Mir-376-P2  Rno-Mir-376-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054694.2: 105471685-105471742 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGACUCAAUCCUUCUUUGGUAUUUAAAAGGUGGAUAUUCCUUCUAUGUUUAUGUUAUUUAUGGUUAAACAUAGAGGAAAUUCCACGUUUUCAGUAUCAAAUGCUGCUUGGAAACAUU
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Structure
        10          20        30        40        50         
AGGACUCAAUCCUUCUU--|      U    G     UA     U         UGUUAU 
                   UGGUAUU AAAA GUGGA  UUCCU CUAUGUUUA      \
                   ACUAUGA UUUU CACCU  AAGGA GAUACAAAU      U
UUACAAAGGUUCGUCGUAA^      C    G     UA     -         UGGUAU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Br Li Li
Star sequence

Pab-Mir-376-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- GUGGAUAUUCCUUCUAUGUUUA -22
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Mature sequence

Pab-Mir-376-P2_3p

mirBase accessionNone
Sequence
37- AACAUAGAGGAAAUUCCACGU -58
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