MirGeneDB ID | Pab-Mir-653 |
Family name |
MIR-653 (all species) |
Seed |
UCACUGG |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-653
Cfa-Mir-653
Cja-Mir-653
Cpo-Mir-653
Dno-Mir-653
Eca-Mir-653
Hsa-Mir-653
Mml-Mir-653
Mmr-Mir-653
Mmu-Mir-653
Ocu-Mir-653
Rno-Mir-653
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 82852827-82852883 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAGAGGUUCUGAUUUUUCAUUCCUUCAGUGUUGAAACAAUCUCUACUGAACCAGCUUCAAACAAGUUCACUGGAGUUUGUUUCAAUAUUGCAAGAAUGAUAAGAUGGAAGCUACUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGAGGUUCUGAUUUUU--| CUU U C CAGCUU
CAUUC CAGUGUUGAAACAA CUCUA UGAAC \
GUAAG GUUAUAACUUUGUU GAGGU ACUUG C
UUUCAUCGAAGGUAGAAUA^ AAC U C AACAAA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Pab-Mir-653_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UUGAAACAAUCUCUACUGAACC -22
Get sequence
|
Mature sequence |
Pab-Mir-653_3p (predicted) |
mirBase accession | None |
Sequence |
35- UUCACUGGAGUUUGUUUCAAUA -57
Get sequence
|