MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-653

Family name MIR-653 (all species)
Seed GUUGAAA
Species Cow (Bos taurus)
MiRBase ID bta-mir-653
Paralogues
Orthologues Cfa-Mir-653  Cja-Mir-653  Cpo-Mir-653  Dno-Mir-653  Eca-Mir-653  Hsa-Mir-653  Mml-Mir-653  Mmr-Mir-653  Mmu-Mir-653  Ocu-Mir-653  Pab-Mir-653  Rno-Mir-653 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037331.1: 10822218-10822278 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-653)		 Mir-653 NC_037331.1: 10822218-10822278 [-] UCSC Ensembl
Mir-489-v2 NC_037331.1: 10822878-10822939 [-] UCSC Ensembl
Mir-489-v1 NC_037331.1: 10822879-10822938 [-] UCSC Ensembl
Mir-489-v3 NC_037331.1: 10822879-10822938 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACAGAAGUUCUAAUAUCUCAUUCCCUCAGUGUUGAAACAAUCUCUGUUGAACCAUGUUACAGGAAGUUCACUGGAGUUUGUUUCAACAUUGGAGGAAUGAUAAGAUGCUACUGUUGUCUA
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Structure
        10          20        30        40        50          
GACAGAAGUUCUAAUAUC--|      CU              U    GU    CCAUGUU 
                    UCAUUCC  CAGUGUUGAAACAA CUCU  UGAA       \
                    AGUAAGG  GUUACAACUUUGUU GAGG  ACUU       A
AUCUGUUGUCAUCGUAGAAU^      AG              U    UC    GAAGGAC 
 .       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-653_5p
mirBase accessionMIMAT0009358
Sequence 
0- UGUUGAAACAAUCUCUGUUGAA -22
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Star sequence

Bta-Mir-653_3p*
mirBase accessionNone
Sequence 
39- CACUGGAGUUUGUUUCAACAUU -61
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