MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-653

Family name MIR-653 (all species)
Seed UGAAACA
Species Horse (Equus caballus)
MiRBase ID eca-mir-653
Paralogues
Orthologues Bta-Mir-653  Cfa-Mir-653  Cja-Mir-653  Cpo-Mir-653  Dno-Mir-653  Hsa-Mir-653  Mml-Mir-653  Mmr-Mir-653  Mmu-Mir-653  Ocu-Mir-653  Pab-Mir-653  Rno-Mir-653 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009151.1: 37174812-37174870 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-653)		 Mir-653 CM009151.1: 37174812-37174870 [-] UCSC Ensembl
Mir-489 CM009151.1: 37175527-37175587 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAGGUUCUAAUUCCUCAUUCCUUCAGUGUUGAAACAAUCUCUGCUGAACCAGGCUCCAAACUACGUUCACUGGAGUUUGUUUCAAUAUUGCAAGAAUGAUAAAAUUGAUGCUACUGU
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Structure
        10          20        30        40        50         
CAAAGGUUCUAAUUCCU--|    CUU              U    GC     CAGGCUC 
                   CAUUC   CAGUGUUGAAACAA CUCU  UGAAC       \
                   GUAAG   GUUAUAACUUUGUU GAGG  ACUUG       C
UGUCAUCGUAGUUAAAAUA^    AAC              U    UC     CAUCAAA 
       110       100        90        80        70        60
Deep sequencing
CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er
Mature sequence

Eca-Mir-653_5p
mirBase accessionMIMAT0012947
Sequence 
0- UUGAAACAAUCUCUGCUGAACC -22
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Star sequence

Eca-Mir-653_3p*
mirBase accessionNone
Sequence 
37- UUCACUGGAGUUUGUUUCAAUA -59
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