| MirGeneDB ID | Pab-Mir-873-v1 |
|---|---|
| Family name | MIR-873 (all species) |
| Seed | GCAGGAA |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-873-v2 |
| Orthologues | Bta-Mir-873-v1 Cfa-Mir-873-v1 Cja-Mir-873-v1 Cpo-Mir-873-v1 Dno-Mir-873-v1 Eca-Mir-873-v1 Ete-Mir-873-v1 Hsa-Mir-873-v1 Laf-Mir-873 Mdo-Mir-873-v1 Mml-Mir-873-v1 Mmr-Mir-873 Mmu-Mir-873-v1 Neu-Mir-873-v1 Oan-Mir-873-v1 Ocu-Mir-873-v1 Rno-Mir-873-v1 |
| Node of Origin (locus) | Mammalia |
| Node of Origin (family) | Mammalia |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054692.2: 29140913-29140971 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GUUCCUGCUUAGAAUAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUACUGet precursor sequence |
| Structure | 10 20 30 40 50 GUUCCUGCUUAGAAUAA--| UGCAUUUGCA UG G AUUGAA GUUUGUG GGAACU U AGUCUCCU \ UAAACAC CCUUGA A UCAGAGGA A UCAUCUUUACUCAUCCUUC^ CCACAAGGGC GU G CAAGUA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Pab-Mir-873-v1_5p |
| mirBase accession | None |
| Sequence |
0- UGCAGGAACUUGUGAGUCUCCU -22
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|
| Co-mature sequence | Pab-Mir-873-v1_3p |
| mirBase accession | None |
| Sequence |
37- GAGACUGAUGAGUUCCCGGGAA -59
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|
