Mir-873-v1

MirGeneDB ID

Rno-Mir-873-v1

Family name

MIR-873 (all species)

Seed

GCAGGAA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-873

Paralogues

Rno-Mir-873-v2

Orthologues

Bta-Mir-873-v1 Cfa-Mir-873-v1 Cja-Mir-873-v1 Cpo-Mir-873-v1 Dno-Mir-873-v1 Eca-Mir-873-v1 Ete-Mir-873-v1 Hsa-Mir-873-v1 Laf-Mir-873 Mdo-Mir-873-v1 Mml-Mir-873-v1 Mmr-Mir-873 Mmu-Mir-873-v1 Neu-Mir-873-v1 Oan-Mir-873-v1 Ocu-Mir-873-v1 Pab-Mir-873-v1

Node of Origin (locus)

Mammalia

Node of Origin (family)

Mammalia

Genome context
(rn6)

chr5: 52481085-52481143 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-873-v1)

Mir-876-v2 chr5: 52461654-52461716 [-] UCSC Ensembl
Mir-876-v1 chr5: 52461656-52461714 [-] UCSC Ensembl
Mir-873-v1 chr5: 52481085-52481143 [-] UCSC Ensembl
Mir-873-v2 chr5: 52481086-52481142 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACACCUGCUUAAAAUCAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGGACAGGAGACUGACAAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUACC

Get precursor sequence

Structure

        10          20        30        40        50         
ACACCUGCUUAAAAUCA--|      UGCAUUUGCA         G        AUUGAA 
                   GUUUGUG          GGAACUUGU AGUCUCCU      \
                   UAAACAC          CCUUGAACA UCAGAGGA      A
CCAUCUUUACUCAUCCUUC^      CCACAAGGGC         G        CAGGUA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-873-v1_5p

mirBase accession

MIMAT0005339

Sequence

0- UGCAGGAACUUGUGAGUCUCCU -22

Get sequence

Proposed targets

microrna.org: MIMAT0005339
TargetScanVert: rno-miR-873-5p
miRDB: MIMAT0005339

Star sequence

Rno-Mir-873-v1_3p*

mirBase accession

MIMAT0017318

Sequence

37- GAGACUGACAAGUUCCCGGGAA -59

Get sequence

Proposed targets

TargetScanVert: rno-miR-873-3p
miRDB: MIMAT0017318