MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-873-v1

Family name MIR-873 (all species)
Seed GCAGGAA
Species Dog (Canis familiaris)
MiRBase ID
Paralogues Cfa-Mir-873-v2 
Orthologues Bta-Mir-873-v1  Cja-Mir-873-v1  Cpo-Mir-873-v1  Dno-Mir-873-v1  Eca-Mir-873-v1  Ete-Mir-873-v1  Hsa-Mir-873-v1  Laf-Mir-873  Mdo-Mir-873-v1  Mml-Mir-873-v1  Mmr-Mir-873  Mmu-Mir-873-v1  Neu-Mir-873-v1  Oan-Mir-873-v1  Ocu-Mir-873-v1  Pab-Mir-873-v1  Rno-Mir-873-v1 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(canFam3_add)		 chr11: 46838187-46838245 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v1)		 Mir-876-v2 chr11: 46819472-46819534 [-] UCSC Ensembl
Mir-876-v1 chr11: 46819474-46819532 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCUGCUUAAAAAUAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUACU
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Structure
        10          20        30        40        50         
UGCCUGCUUAAAAAUAA--|      UGCAUUUGCA      UG G        AUUGAA 
                   GUUUGUG          GGAACU  U AGUCUCCU      \
                   UAAACAC          CCUUGA  A UCAGAGGA      A
UCAUCUUUACUCAUCCUUC^      CCACAAGGGC      GU G        CAAGUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-873-v1_5p
mirBase accessionNone
Sequence 
0- UGCAGGAACUUGUGAGUCUCCU -22
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Star sequence

Cfa-Mir-873-v1_3p*
mirBase accessionNone
Sequence 
37- GAGACUGAUGAGUUCCCGGGAA -59
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