MirGeneDB ID | Cja-Mir-873-v1 |
---|---|
Family name | MIR-873 (all species) |
Seed | GCAGGAA |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-873-v2 |
Orthologues | Bta-Mir-873-v1 Cfa-Mir-873-v1 Cpo-Mir-873-v1 Dno-Mir-873-v1 Eca-Mir-873-v1 Ete-Mir-873-v1 Hsa-Mir-873-v1 Laf-Mir-873 Mdo-Mir-873-v1 Mml-Mir-873-v1 Mmr-Mir-873 Mmu-Mir-873-v1 Neu-Mir-873-v1 Oan-Mir-873-v1 Ocu-Mir-873-v1 Pab-Mir-873-v1 Rno-Mir-873-v1 |
Node of Origin (locus) | Mammalia |
Node of Origin (family) | Mammalia |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 133148383-133148441 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GUGCCUGCUUAGAAUAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUACUGet precursor sequence |
Structure | 10 20 30 40 50 GUGCCUGCUUAGAAUAA--| UGCAUUUGCA UG G AUUGAA GUUUGUG GGAACU U AGUCUCCU \ UAAACAC CCUUGA A UCAGAGGA A UCAUCUUUACUCAUCCUUC^ CCACAAGGGC GU G CAAGUA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Cja-Mir-873-v1_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGCAGGAACUUGUGAGUCUCCU -22
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|
Co-mature sequence | Cja-Mir-873-v1_3p (predicted) |
mirBase accession | None |
Sequence |
37- GAGACUGAUGAGUUCCCGGGAA -59
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