| MirGeneDB ID | Cja-Mir-873-v2 |
|---|---|
| Family name | MIR-873 (all species) |
| Seed | CAGGAAC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-873-v1 |
| Orthologues | Bta-Mir-873-v2 Cfa-Mir-873-v2 Cpo-Mir-873-v2 Dno-Mir-873-v2 Eca-Mir-873-v2 Ete-Mir-873-v2 Hsa-Mir-873-v2 Laf-Mir-873 Mdo-Mir-873-v2 Mml-Mir-873-v2 Mmr-Mir-873 Mmu-Mir-873-v2 Neu-Mir-873-v2 Oan-Mir-873-v2 Ocu-Mir-873-v2 Pab-Mir-873-v2 Rno-Mir-873-v2 |
| Node of Origin (locus) | Mammalia |
| Node of Origin (family) | Mammalia |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 133148384-133148440 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGCCUGCUUAGAAUAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUACGet precursor sequence |
| Structure | 10 20 30 40 50 UGCCUGCUUAGAAUAAG--| UGCAUUUGCA UG G AUUGAA UUUGUG GGAACU U AGUCUCCU \ AAACAC CCUUGA A UCAGAGGA A CAUCUUUACUCAUCCUUCU^ CCACAAGGGC GU G CAAGUA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-873-v2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- GCAGGAACUUGUGAGUCUCCUA -22
Get sequence
|
| Star sequence | Cja-Mir-873-v2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
35- GGAGACUGAUGAGUUCCCGGGA -57
Get sequence
|
