MirGeneDB 3.0
MirGeneDB ID

Oan-Mir-873-v2

Family name MIR-873 (all species)
Seed CAGGAAC
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-873
Paralogues Oan-Mir-873-v1 
Orthologues Bta-Mir-873-v2  Cfa-Mir-873-v2  Cja-Mir-873-v2  Cpo-Mir-873-v2  Dno-Mir-873-v2  Eca-Mir-873-v2  Ete-Mir-873-v2  Hsa-Mir-873-v2  Laf-Mir-873  Mdo-Mir-873-v2  Mml-Mir-873-v2  Mmr-Mir-873  Mmu-Mir-873-v2  Neu-Mir-873-v2  Ocu-Mir-873-v2  Pab-Mir-873-v2  Rno-Mir-873-v2 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(mOrnAna1.p.v1_plustraces)		 NC_041753.1: 38127937-38127993 [-]
Clustered miRNAs
(< 50kb from Mir-873-v2)		 Mir-873-v1 NC_041753.1: 38127936-38127994 [-]
Mir-873-v2 NC_041753.1: 38127937-38127993 [-]
Precursor
(pre-Mir +30nt flank)
GUGCCUACUUAAACAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACGGGAGACUGGUGAGUUCCCGGGAACACCCACAAAUUUUCCUGCUCAUUCCUGU
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Structure
        10          20        30        40        50        
GUGCCUACUUAAACAAG--|     UGCAUUUGCA      UG G        AUUGAA 
                   UUUGUG          GGAACU  U AGUCUCCU      \
                   AAACAC          CCUUGA  G UCAGAGGG      A
UGUCCUUACUCGUCCUUUU^     CCACAAGGGC      GU G        CAAGUA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Ce He Ki Te
Mature sequence

Oan-Mir-873-v2_5p
mirBase accessionMIMAT0007272
Sequence 
0- GCAGGAACUUGUGAGUCUCCUA -22
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Star sequence

Oan-Mir-873-v2_3p*
mirBase accessionMIMAT0007273
Sequence 
35- GGAGACUGGUGAGUUCCCGGGA -57
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