MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-873-v2

Family name MIR-873 (all species)
Seed CAGGAAC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-873
Paralogues Rno-Mir-873-v1 
Orthologues Bta-Mir-873-v2  Cfa-Mir-873-v2  Cja-Mir-873-v2  Cpo-Mir-873-v2  Dno-Mir-873-v2  Eca-Mir-873-v2  Ete-Mir-873-v2  Hsa-Mir-873-v2  Laf-Mir-873  Mdo-Mir-873-v2  Mml-Mir-873-v2  Mmr-Mir-873  Mmu-Mir-873-v2  Neu-Mir-873-v2  Oan-Mir-873-v2  Ocu-Mir-873-v2  Pab-Mir-873-v2 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(rn6)		 chr5: 52481086-52481142 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v2)		 Mir-876-v2 chr5: 52461654-52461716 [-] UCSC Ensembl
Mir-876-v1 chr5: 52461656-52461714 [-] UCSC Ensembl
Mir-873-v1 chr5: 52481085-52481143 [-] UCSC Ensembl
Mir-873-v2 chr5: 52481086-52481142 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACCUGCUUAAAAUCAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGGACAGGAGACUGACAAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUAC
Get precursor sequence
Structure
        10          20        30        40        50        
CACCUGCUUAAAAUCAG--|     UGCAUUUGCA         G        AUUGAA 
                   UUUGUG          GGAACUUGU AGUCUCCU      \
                   AAACAC          CCUUGAACA UCAGAGGA      A
CAUCUUUACUCAUCCUUCU^     CCACAAGGGC         G        CAGGUA 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
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Mature sequence

Rno-Mir-873-v2_5p
mirBase accessionMIMAT0005339
Sequence 
0- GCAGGAACUUGUGAGUCUCCUA -22
Get sequence
Proposed targets microrna.org: MIMAT0005339
TargetScanVert: rno-miR-873-5p
miRDB: MIMAT0005339
Star sequence

Rno-Mir-873-v2_3p*
mirBase accessionMIMAT0017318
Sequence 
35- GGAGACUGACAAGUUCCCGGGA -57
Get sequence
Proposed targets TargetScanVert: rno-miR-873-3p
miRDB: MIMAT0017318