MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-876-v1

Family name MIR-876 (all species)
Seed GGUGGUU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-876
Paralogues Rno-Mir-876-v2 
Orthologues Bta-Mir-876-v1  Cfa-Mir-876-v1  Cja-Mir-876-v1  Cpo-Mir-876-v1  Dno-Mir-876-v1  Eca-Mir-876-v1  Ete-Mir-876  Hsa-Mir-876-v1  Laf-Mir-876-v1  Mml-Mir-876-v1  Mmr-Mir-876  Ocu-Mir-876-v1  Pab-Mir-876-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr5: 52461656-52461714 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-876-v1)		 Mir-876-v2 chr5: 52461654-52461716 [-] UCSC Ensembl
Mir-876-v1 chr5: 52461656-52461714 [-] UCSC Ensembl
Mir-873-v1 chr5: 52481085-52481143 [-] UCSC Ensembl
Mir-873-v2 chr5: 52481086-52481142 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGCAUUACAUAAACUGUCAAGUGCUGUGGAUUUCUCUGUGAAUCACCAUAUCAAAUCUAAUGUGGUGGUGGUUUGCAAAGUAAUUCAUAGUGCUUCAUAGAUGCUCCUACAGUUGCU
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Structure
        10          20        30        40        50         
CAAGCAUUACAUAAACU--| C   UG         U  C  UG         AUCAAAU 
                   GU AAG  CUGUGGAUU CU UG  AAUCACCAU       \
                   UA UUC  GAUACUUAA GA AC  UUGGUGGUG       C
UCGUUGACAUCCUCGUAGA^ C   GU         U  A  GU         GUGUAAU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
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Star sequence

Rno-Mir-876-v1_5p* (predicted)
mirBase accessionMIMAT0012843
Sequence 
0- GAUUUCUCUGUGAAUCACCAUA -22
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Proposed targets microrna.org: MIMAT0012843
TargetScanVert: rno-miR-876
miRDB: MIMAT0012843
Mature sequence

Rno-Mir-876-v1_3p (predicted)
mirBase accessionNone
Sequence 
37- UGGUGGUUUGCAAAGUAAUUCA -59
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