MirGeneDB ID | Mml-Mir-876-v1 |
---|---|
Family name | MIR-876 (all species) |
Seed | GGUGGUU |
Species | Rhesus monkey (Macaca mulatta) |
MiRBase ID | mml-mir-876 |
Paralogues | Mml-Mir-876-v2 |
Orthologues | Bta-Mir-876-v1 Cfa-Mir-876-v1 Cja-Mir-876-v1 Cpo-Mir-876-v1 Dno-Mir-876-v1 Eca-Mir-876-v1 Ete-Mir-876 Hsa-Mir-876-v1 Laf-Mir-876-v1 Mmr-Mir-876 Ocu-Mir-876-v1 Pab-Mir-876-v1 Rno-Mir-876-v1 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_003339765.3_Mmul_10_traces) |
CM014350.1: 54900832-54900890 [+] UCSC Ensembl |
Clustered miRNAs (< 50kb from Mir-876-v1) |
Mir-873-v1
CM014350.1: 54879499-54879557 [+]
UCSC
Ensembl
Mir-873-v2 CM014350.1: 54879500-54879556 [+] UCSC Ensembl Mir-876-v2 CM014350.1: 54900830-54900892 [+] UCSC Ensembl Mir-876-v1 CM014350.1: 54900832-54900890 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CAGGCUUUACACAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAUGet precursor sequence |
Structure | 10 20 30 40 50 CAGGCUUUACACAAACU--| UG U AUCUAAG GUGAAG CUGUGGAUU CUUUGUGAAUCACCAU \ CACUUC GAUACUUAA GAAACAUUUGGUGGUG C UAGUUGACGUCUUCGUGGA^ GU U GUGUAAU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Mml-Mir-876-v1_5p* |
mirBase accession | MIMAT0006519 |
Sequence |
0- GAUUUCUUUGUGAAUCACCAUA -22
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-876-5p |
Mature sequence | Mml-Mir-876-v1_3p |
mirBase accession | MIMAT0006520 |
Sequence |
37- UGGUGGUUUACAAAGUAAUUCA -59
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-876-3p |