MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-876-v1

Family name MIR-876 (all species)
Seed GGUGGUU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-876-v2 
Orthologues Bta-Mir-876-v1  Cfa-Mir-876-v1  Cpo-Mir-876-v1  Dno-Mir-876-v1  Eca-Mir-876-v1  Ete-Mir-876  Hsa-Mir-876-v1  Laf-Mir-876-v1  Mml-Mir-876-v1  Mmr-Mir-876  Ocu-Mir-876-v1  Pab-Mir-876-v1  Rno-Mir-876-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021915.1: 133122227-133122285 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGCUUUACACAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAU
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Structure
        10          20        30        40        50         
CAGGCUUUACACAAACU--|     UG         U                AUCUAAG 
                   GUGAAG  CUGUGGAUU CUUUGUGAAUCACCAU       \
                   CACUUC  GAUACUUAA GAAACAUUUGGUGGUG       C
UAGUUGACGUCUUCGUGGA^     GU         U                GUGUAAU 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-876-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- GAUUUCUUUGUGAAUCACCAUA -22
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Mature sequence

Cja-Mir-876-v1_3p (predicted)
mirBase accessionNone
Sequence 
37- UGGUGGUUUACAAAGUAAUUCA -59
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