| MirGeneDB ID | Cja-Mir-876-v1 |
|---|---|
| Family name | MIR-876 (all species) |
| Seed | GGUGGUU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-876-v2 |
| Orthologues | Bta-Mir-876-v1 Cfa-Mir-876-v1 Cpo-Mir-876-v1 Dno-Mir-876-v1 Eca-Mir-876-v1 Ete-Mir-876 Hsa-Mir-876-v1 Laf-Mir-876-v1 Mml-Mir-876-v1 Mmr-Mir-876 Ocu-Mir-876-v1 Pab-Mir-876-v1 Rno-Mir-876-v1 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 133122227-133122285 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAGGCUUUACACAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAUGet precursor sequence |
| Structure | 10 20 30 40 50 CAGGCUUUACACAAACU--| UG U AUCUAAG GUGAAG CUGUGGAUU CUUUGUGAAUCACCAU \ CACUUC GAUACUUAA GAAACAUUUGGUGGUG C UAGUUGACGUCUUCGUGGA^ GU U GUGUAAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Cja-Mir-876-v1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GAUUUCUUUGUGAAUCACCAUA -22
Get sequence
|
| Mature sequence | Cja-Mir-876-v1_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- UGGUGGUUUACAAAGUAAUUCA -59
Get sequence
|
