MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-876-v1

Family name MIR-876 (all species)
Seed GGUGGUU
Species Guinea pig (Cavia porcellus)
MiRBase ID
Paralogues Cpo-Mir-876-v2 
Orthologues Bta-Mir-876-v1  Cfa-Mir-876-v1  Cja-Mir-876-v1  Dno-Mir-876-v1  Eca-Mir-876-v1  Ete-Mir-876  Hsa-Mir-876-v1  Laf-Mir-876-v1  Mml-Mir-876-v1  Mmr-Mir-876  Ocu-Mir-876-v1  Pab-Mir-876-v1  Rno-Mir-876-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_2: 7371451-7371509 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-876-v1)		 Mir-873-v1 scaffold_2: 7394199-7394257 [-] UCSC
Mir-873-v2 scaffold_2: 7394200-7394256 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAAGCUUUAUACAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUGAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAAUUGAU
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Structure
        10          20        30        40        50         
CAAGCUUUAUACAAACU--|     UG         U                AUCUGAG 
                   GUGAAG  CUGUGGAUU CUUUGUGAAUCACCAU       \
                   CACUUC  GAUACUUAA GAAACAUUUGGUGGUG       C
UAGUUAACGUCUUCGUGGA^     GU         U                GUGUAAU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-876-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- GAUUUCUUUGUGAAUCACCAUA -22
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Mature sequence

Cpo-Mir-876-v1_3p
mirBase accessionNone
Sequence 
37- UGGUGGUUUACAAAGUAAUUCA -59
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