| MirGeneDB ID | Laf-Mir-876-v1 |
|---|---|
| Family name | MIR-876 (all species) |
| Seed | GGGGGUU |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-876-v2 |
| Orthologues | Bta-Mir-876-v1 Cfa-Mir-876-v1 Cja-Mir-876-v1 Cpo-Mir-876-v1 Dno-Mir-876-v1 Eca-Mir-876-v1 Ete-Mir-876 Hsa-Mir-876-v1 Mml-Mir-876-v1 Mmr-Mir-876 Ocu-Mir-876-v1 Pab-Mir-876-v1 Rno-Mir-876-v1 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010033.1: 70593769-70593827 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAAGCUUUAAACAAACUGUGAAAUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAACUAAUAUGGUGGGGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAUGet precursor sequence |
| Structure | 10 20 30 40 50 CAAGCUUUAAACAAACU--| AU U A AUCUAAA GUGAA GCUGUGGAUU CUUUGUGAAUC CCAU \ CACUU UGAUACUUAA GAAACAUUUGG GGUG C UAGUUGACGUCUUCGUGGA^ CG U G GUAUAAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Laf-Mir-876-v1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GAUUUCUUUGUGAAUCACCAUA -22
Get sequence
|
| Mature sequence | Laf-Mir-876-v1_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- UGGGGGUUUACAAAGUAAUUCA -59
Get sequence
|
