MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-876-v1

Family name MIR-876 (all species)
Seed GGUGGUU
Species Cow (Bos taurus)
MiRBase ID bta-mir-876
Paralogues Bta-Mir-876-v2 
Orthologues Cfa-Mir-876-v1  Cja-Mir-876-v1  Cpo-Mir-876-v1  Dno-Mir-876-v1  Eca-Mir-876-v1  Ete-Mir-876  Hsa-Mir-876-v1  Laf-Mir-876-v1  Mml-Mir-876-v1  Mmr-Mir-876  Ocu-Mir-876-v1  Pab-Mir-876-v1  Rno-Mir-876-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037335.1: 15239274-15239332 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-876-v1)		 Mir-873-v1 NC_037335.1: 15215608-15215666 [+] UCSC Ensembl
Mir-873-v2 NC_037335.1: 15215609-15215665 [+] UCSC Ensembl
Mir-876-v2 NC_037335.1: 15239272-15239334 [+] UCSC Ensembl
Mir-876-v1 NC_037335.1: 15239274-15239332 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGCUGUACCCAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAU
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Structure
        10          20        30        40        50         
CAAGCUGUACCCAAACU--|     UG         U                AUCUAAG 
                   GUGAAG  CUGUGGAUU CUUUGUGAAUCACCAU       \
                   CACUUC  GAUACUUAA GAAACAUUUGGUGGUG       C
UAGUUGACGUCUUCGUGGA^     GU         U                GUGUAAU 
       110       100        90        80        70        60
Deep sequencing
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Bta-Mir-876-v1_5p*
mirBase accessionMIMAT0009380
Sequence 
0- GAUUUCUUUGUGAAUCACCAUA -22
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Proposed targets TargetScanVert: bta-miR-876
Mature sequence

Bta-Mir-876-v1_3p
mirBase accessionNone
Sequence 
37- UGGUGGUUUACAAAGUAAUUCA -59
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