| MirGeneDB ID | Bta-Mir-876-v2 |
|---|---|
| Family name | MIR-876 (all species) |
| Seed | GGAUUUC |
| Species | Cow (Bos taurus) |
| MiRBase ID | bta-mir-876 |
| Paralogues | Bta-Mir-876-v1 |
| Orthologues | Cfa-Mir-876-v2 Cja-Mir-876-v2 Cpo-Mir-876-v2 Dno-Mir-876-v2 Eca-Mir-876-v2 Ete-Mir-876 Hsa-Mir-876-v2 Laf-Mir-876-v2 Mml-Mir-876-v2 Mmr-Mir-876 Ocu-Mir-876-v2 Pab-Mir-876-v2 Rno-Mir-876-v2 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037335.1: 15239272-15239334 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-876-v2) |
Mir-873-v1
NC_037335.1: 15215608-15215666 [+]
UCSC
Ensembl
Mir-873-v2 NC_037335.1: 15215609-15215665 [+] UCSC Ensembl Mir-876-v2 NC_037335.1: 15239272-15239334 [+] UCSC Ensembl Mir-876-v1 NC_037335.1: 15239274-15239332 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | ACCAAGCUGUACCCAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAUCUGet precursor sequence |
| Structure | 10 20 30 40 50 60 ACCAAGCUGUACCCAAA--| UG U UAUCUAAG CUGUGAAG CUGUGGAUU CUUUGUGAAUCACCA \ GACACUUC GAUACUUAA GAAACAUUUGGUGGU C UCUAGUUGACGUCUUCGUG^ GU U GGUGUAAU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Bta-Mir-876-v2_5p |
| mirBase accession | MIMAT0009380 |
| Sequence |
0- UGGAUUUCUUUGUGAAUCACCA -22
Get sequence
|
| Proposed targets |
TargetScanVert: bta-miR-876 |
| Star sequence | Bta-Mir-876-v2_3p* |
| mirBase accession | None |
| Sequence |
41- GUGGUUUACAAAGUAAUUCAUA -63
Get sequence
|
