MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-876-v2

Family name MIR-876 (all species)
Seed GGAUUUC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues Ocu-Mir-876-v1 
Orthologues Bta-Mir-876-v2  Cfa-Mir-876-v2  Cja-Mir-876-v2  Cpo-Mir-876-v2  Dno-Mir-876-v2  Eca-Mir-876-v2  Ete-Mir-876  Hsa-Mir-876-v2  Laf-Mir-876-v2  Mml-Mir-876-v2  Mmr-Mir-876  Pab-Mir-876-v2  Rno-Mir-876-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chr1: 24482712-24482774 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-876-v2)
Mir-873-v1 chr1: 24466640-24466698 [+] UCSC Ensembl
Mir-873-v2 chr1: 24466641-24466697 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGAAGCUUUACACAAACUGUGGAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAUCU
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Structure
        10          20        30        40        50        60 
ACGAAGCUUUACACAAA--|       UG         U               UAUCUAAG 
                   CUGUGGAG  CUGUGGAUU CUUUGUGAAUCACCA        \
                   GACACUUC  GAUACUUAA GAAACAUUUGGUGGU        C
UCUAGUUGACGUCUUCGUG^       GU         U               GGUGUAAU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-876-v2_5p

mirBase accessionNone
Sequence
0- UGGAUUUCUUUGUGAAUCACCA -22
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Star sequence

Ocu-Mir-876-v2_3p*

mirBase accessionNone
Sequence
41- GUGGUUUACAAAGUAAUUCAUA -63
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