MirGeneDB ID | Cja-Mir-876-v2 |
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Family name | MIR-876 (all species) |
Seed | GGAUUUC |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-876-v1 |
Orthologues | Bta-Mir-876-v2 Cfa-Mir-876-v2 Cpo-Mir-876-v2 Dno-Mir-876-v2 Eca-Mir-876-v2 Ete-Mir-876 Hsa-Mir-876-v2 Laf-Mir-876-v2 Mml-Mir-876-v2 Mmr-Mir-876 Ocu-Mir-876-v2 Pab-Mir-876-v2 Rno-Mir-876-v2 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 133122225-133122287 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | ACCAGGCUUUACACAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAUCUGet precursor sequence |
Structure | 10 20 30 40 50 60 ACCAGGCUUUACACAAA--| UG U UAUCUAAG CUGUGAAG CUGUGGAUU CUUUGUGAAUCACCA \ GACACUUC GAUACUUAA GAAACAUUUGGUGGU C UCUAGUUGACGUCUUCGUG^ GU U GGUGUAAU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Cja-Mir-876-v2_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGGAUUUCUUUGUGAAUCACCA -22
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|
Star sequence | Cja-Mir-876-v2_3p* (predicted) |
mirBase accession | None |
Sequence |
41- GUGGUUUACAAAGUAAUUCAUA -63
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|