Mir-876-v2

MirGeneDB ID

Eca-Mir-876-v2

Family name

MIR-876 (all species)

Seed

GGAUUUC

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-876

Paralogues

Eca-Mir-876-v1

Orthologues

Bta-Mir-876-v2 Cfa-Mir-876-v2 Cja-Mir-876-v2 Cpo-Mir-876-v2 Dno-Mir-876-v2 Ete-Mir-876 Hsa-Mir-876-v2 Laf-Mir-876-v2 Mml-Mir-876-v2 Mmr-Mir-876 Ocu-Mir-876-v2 Pab-Mir-876-v2 Rno-Mir-876-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009170.1: 46212005-46212067 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-876-v2)

Mir-876-v2 CM009170.1: 46212005-46212067 [-] UCSC Ensembl
Mir-876-v1 CM009170.1: 46212007-46212065 [-] UCSC Ensembl
Mir-873-v1 CM009170.1: 46232418-46232476 [-] UCSC Ensembl
Mir-873-v2 CM009170.1: 46232419-46232475 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCAAGCUUUACCCAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUGAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAUCU

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Structure

        10          20        30        40        50        60 
ACCAAGCUUUACCCAAA--|       UG         U               UAUCUGAG 
                   CUGUGAAG  CUGUGGAUU CUUUGUGAAUCACCA        \
                   GACACUUC  GAUACUUAA GAAACAUUUGGUGGU        C
UCUAGUUGACGUCUUCGUG^       GU         U               GGUGUAAU 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-876-v2_5p

mirBase accession

MIMAT0013121

Sequence

0- UGGAUUUCUUUGUGAAUCACCA -22

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Star sequence

Eca-Mir-876-v2_3p* (predicted)

mirBase accession

MIMAT0013122

Sequence

41- GUGGUUUACAAAGUAAUUCAUA -63

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