MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-873-v2

Family name MIR-873 (all species)
Seed CAGGAAC
Species Horse (Equus caballus)
MiRBase ID eca-mir-873
Paralogues Eca-Mir-873-v1 
Orthologues Bta-Mir-873-v2  Cfa-Mir-873-v2  Cja-Mir-873-v2  Cpo-Mir-873-v2  Dno-Mir-873-v2  Ete-Mir-873-v2  Hsa-Mir-873-v2  Laf-Mir-873  Mdo-Mir-873-v2  Mml-Mir-873-v2  Mmr-Mir-873  Mmu-Mir-873-v2  Neu-Mir-873-v2  Oan-Mir-873-v2  Ocu-Mir-873-v2  Pab-Mir-873-v2  Rno-Mir-873-v2 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009170.1: 46232419-46232475 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v2)		 Mir-876-v2 CM009170.1: 46212005-46212067 [-] UCSC Ensembl
Mir-876-v1 CM009170.1: 46212007-46212065 [-] UCSC Ensembl
Mir-873-v1 CM009170.1: 46232418-46232476 [-] UCSC Ensembl
Mir-873-v2 CM009170.1: 46232419-46232475 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACCUGCUUAAAAGAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUGC
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Structure
        10          20        30        40        50        
UACCUGCUUAAAAGAAG--|     UGCAUUUGCA      UG G        AUUGAA 
                   UUUGUG          GGAACU  U AGUCUCCU      \
                   AAACAC          CCUUGA  A UCAGAGGA      A
CGUCUUUACUCAUCCUUCU^     CCACAAGGGC      GU G        CAAGUA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er Er
Mature sequence

Eca-Mir-873-v2_5p
mirBase accessionMIMAT0013120
Sequence 
0- GCAGGAACUUGUGAGUCUCCUA -22
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Star sequence

Eca-Mir-873-v2_3p*
mirBase accessionNone
Sequence 
35- GGAGACUGAUGAGUUCCCGGGA -57
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