MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-873

Family name MIR-873 (all species)
Seed GCAGGAA
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Bta-Mir-873-v1  Bta-Mir-873-v2  Cfa-Mir-873-v1  Cfa-Mir-873-v2  Cja-Mir-873-v1  Cja-Mir-873-v2  Cpo-Mir-873-v1  Cpo-Mir-873-v2  Dno-Mir-873-v1  Dno-Mir-873-v2  Eca-Mir-873-v1  Eca-Mir-873-v2  Ete-Mir-873-v1  Ete-Mir-873-v2  Hsa-Mir-873-v1  Hsa-Mir-873-v2  Mdo-Mir-873-v1  Mdo-Mir-873-v2  Mml-Mir-873-v1  Mml-Mir-873-v2  Mmr-Mir-873  Mmu-Mir-873-v1  Mmu-Mir-873-v2  Neu-Mir-873-v1  Neu-Mir-873-v2  Oan-Mir-873-v1  Oan-Mir-873-v2  Ocu-Mir-873-v1  Ocu-Mir-873-v2  Pab-Mir-873-v1  Pab-Mir-873-v2  Rno-Mir-873-v1  Rno-Mir-873-v2 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010033.1: 70558847-70558905 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCCUGUUUAAAAUACGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUACU
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Structure
        10          20        30        40        50         
GUGCCUGUUUAAAAUAC--|      UGCAUUUGCA      UG G        AUUGAA 
                   GUUUGUG          GGAACU  U AGUCUCCU      \
                   UAAACAC          CCUUGA  A UCAGAGGA      A
UCAUCUUUACUCAUCCUUC^      CCACAAGGGC      GU G        CAAGUA 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Wh
Mature sequence

Laf-Mir-873_5p (predicted)
mirBase accessionNone
Sequence 
0- UGCAGGAACUUGUGAGUCUCCU -22
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Star sequence

Laf-Mir-873_3p* (predicted)
mirBase accessionNone
Sequence 
37- GAGACUGAUGAGUUCCCGGGAA -59
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