MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-873-v1

Family name MIR-873 (all species)
Seed GCAGGAA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-873
Paralogues Ocu-Mir-873-v2 
Orthologues Bta-Mir-873-v1  Cfa-Mir-873-v1  Cja-Mir-873-v1  Cpo-Mir-873-v1  Dno-Mir-873-v1  Eca-Mir-873-v1  Ete-Mir-873-v1  Hsa-Mir-873-v1  Laf-Mir-873  Mdo-Mir-873-v1  Mml-Mir-873-v1  Mmr-Mir-873  Mmu-Mir-873-v1  Neu-Mir-873-v1  Oan-Mir-873-v1  Pab-Mir-873-v1  Rno-Mir-873-v1 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(oryCun2_add)		 chr1: 24466640-24466698 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v1)		 Mir-873-v1 chr1: 24466640-24466698 [+] UCSC Ensembl
Mir-873-v2 chr1: 24466641-24466697 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUCUGCUUAAAAUAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUGCUCACUCUGCUG
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Structure
        10          20        30        40        50         
CCAUCUGCUUAAAAUAA--|      UGCAUUUGCA      UG G        AUUGAA 
                   GUUUGUG          GGAACU  U AGUCUCCU      \
                   UAAACAC          CCUUGA  A UCAGAGGA      A
GUCGUCUCACUCGUCCUUC^      CCACAAGGGC      GU G        CAAGUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-873-v1_5p
mirBase accessionMIMAT0048573
Sequence 
0- UGCAGGAACUUGUGAGUCUCCU -22
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Co-mature sequence

Ocu-Mir-873-v1_3p
mirBase accessionMIMAT0048574
Sequence 
37- GAGACUGAUGAGUUCCCGGGAA -59
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