MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-873-v2

Family name MIR-873 (all species)
Seed CAGGAAC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-873
Paralogues Ocu-Mir-873-v1 
Orthologues Bta-Mir-873-v2  Cfa-Mir-873-v2  Cja-Mir-873-v2  Cpo-Mir-873-v2  Dno-Mir-873-v2  Eca-Mir-873-v2  Ete-Mir-873-v2  Hsa-Mir-873-v2  Laf-Mir-873  Mdo-Mir-873-v2  Mml-Mir-873-v2  Mmr-Mir-873  Mmu-Mir-873-v2  Neu-Mir-873-v2  Oan-Mir-873-v2  Pab-Mir-873-v2  Rno-Mir-873-v2 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(oryCun2_add)		 chr1: 24466641-24466697 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v2)		 Mir-873-v1 chr1: 24466640-24466698 [+] UCSC Ensembl
Mir-873-v2 chr1: 24466641-24466697 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCUGCUUAAAAUAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUGCUCACUCUGCU
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Structure
        10          20        30        40        50        
CAUCUGCUUAAAAUAAG--|     UGCAUUUGCA      UG G        AUUGAA 
                   UUUGUG          GGAACU  U AGUCUCCU      \
                   AAACAC          CCUUGA  A UCAGAGGA      A
UCGUCUCACUCGUCCUUCU^     CCACAAGGGC      GU G        CAAGUA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-873-v2_5p
mirBase accessionMIMAT0048573
Sequence 
0- GCAGGAACUUGUGAGUCUCCUA -22
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Star sequence

Ocu-Mir-873-v2_3p*
mirBase accessionMIMAT0048574
Sequence 
35- GGAGACUGAUGAGUUCCCGGGA -57
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