MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-873-v1

Family name MIR-873 (all species)
Seed GCAGGAA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-873
Paralogues Mdo-Mir-873-v2 
Orthologues Bta-Mir-873-v1  Cfa-Mir-873-v1  Cja-Mir-873-v1  Cpo-Mir-873-v1  Dno-Mir-873-v1  Eca-Mir-873-v1  Ete-Mir-873-v1  Hsa-Mir-873-v1  Laf-Mir-873  Mml-Mir-873-v1  Mmr-Mir-873  Mmu-Mir-873-v1  Neu-Mir-873-v1  Oan-Mir-873-v1  Ocu-Mir-873-v1  Pab-Mir-873-v1  Rno-Mir-873-v1 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(monDom5_add)		 6: 46253223-46253281 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v1)		 Mir-873-v1 6: 46253223-46253281 [-] UCSC Ensembl
Mir-873-v2 6: 46253224-46253280 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUACCAGCUUUAAACAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACGGGAGACUGGUGAGUUCCCGGGAACACCCACAAAUUUUCCUGCUAAUUUCAUUA
Get precursor sequence
Structure
        10          20        30        40        50         
GUACCAGCUUUAAACAA--|      UGCAUUUGCA      UG G        AUUGAA 
                   GUUUGUG          GGAACU  U AGUCUCCU      \
                   UAAACAC          CCUUGA  G UCAGAGGG      A
AUUACUUUAAUCGUCCUUU^      CCACAAGGGC      GU G        CAAGUA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-873-v1_5p
mirBase accessionMIMAT0028664
Sequence 
0- UGCAGGAACUUGUGAGUCUCCU -22
Get sequence
Proposed targets TargetScanVert: mdo-miR-873-5p
Star sequence

Mdo-Mir-873-v1_3p*
mirBase accessionMIMAT0028665
Sequence 
37- GAGACUGGUGAGUUCCCGGGAA -59
Get sequence
Proposed targets TargetScanVert: mdo-miR-873-3p