Mir-876-v1

MirGeneDB ID

Eca-Mir-876-v1

Family name

MIR-876 (all species)

Seed

GGUGGUU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-876

Paralogues

Eca-Mir-876-v2

Orthologues

Bta-Mir-876-v1 Cfa-Mir-876-v1 Cja-Mir-876-v1 Cpo-Mir-876-v1 Dno-Mir-876-v1 Ete-Mir-876 Hsa-Mir-876-v1 Laf-Mir-876-v1 Mml-Mir-876-v1 Mmr-Mir-876 Ocu-Mir-876-v1 Pab-Mir-876-v1 Rno-Mir-876-v1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009170.1: 46212007-46212065 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-876-v1)

Mir-876-v2 CM009170.1: 46212005-46212067 [-] UCSC Ensembl
Mir-876-v1 CM009170.1: 46212007-46212065 [-] UCSC Ensembl
Mir-873-v1 CM009170.1: 46232418-46232476 [-] UCSC Ensembl
Mir-873-v2 CM009170.1: 46232419-46232475 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAAGCUUUACCCAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUGAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAU

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Structure

        10          20        30        40        50         
CAAGCUUUACCCAAACU--|     UG         U                AUCUGAG 
                   GUGAAG  CUGUGGAUU CUUUGUGAAUCACCAU       \
                   CACUUC  GAUACUUAA GAAACAUUUGGUGGUG       C
UAGUUGACGUCUUCGUGGA^     GU         U                GUGUAAU 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-876-v1_5p* (predicted)

mirBase accession

MIMAT0013121

Sequence

0- GAUUUCUUUGUGAAUCACCAUA -22

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Mature sequence

Eca-Mir-876-v1_3p

mirBase accession

MIMAT0013122

Sequence

37- UGGUGGUUUACAAAGUAAUUCA -59

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