MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-876-v1

Family name MIR-876 (all species)
Seed GGUGGUU
Species Horse (Equus caballus)
MiRBase ID eca-mir-876
Paralogues Eca-Mir-876-v2 
Orthologues Bta-Mir-876-v1  Cfa-Mir-876-v1  Cja-Mir-876-v1  Cpo-Mir-876-v1  Dno-Mir-876-v1  Ete-Mir-876  Hsa-Mir-876-v1  Laf-Mir-876-v1  Mml-Mir-876-v1  Mmr-Mir-876  Ocu-Mir-876-v1  Pab-Mir-876-v1  Rno-Mir-876-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009170.1: 46212007-46212065 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-876-v1)		 Mir-876-v2 CM009170.1: 46212005-46212067 [-] UCSC Ensembl
Mir-876-v1 CM009170.1: 46212007-46212065 [-] UCSC Ensembl
Mir-873-v1 CM009170.1: 46232418-46232476 [-] UCSC Ensembl
Mir-873-v2 CM009170.1: 46232419-46232475 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGCUUUACCCAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUGAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAU
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Structure
        10          20        30        40        50         
CAAGCUUUACCCAAACU--|     UG         U                AUCUGAG 
                   GUGAAG  CUGUGGAUU CUUUGUGAAUCACCAU       \
                   CACUUC  GAUACUUAA GAAACAUUUGGUGGUG       C
UAGUUGACGUCUUCGUGGA^     GU         U                GUGUAAU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-876-v1_5p* (predicted)
mirBase accessionMIMAT0013121
Sequence 
0- GAUUUCUUUGUGAAUCACCAUA -22
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Mature sequence

Eca-Mir-876-v1_3p
mirBase accessionMIMAT0013122
Sequence 
37- UGGUGGUUUACAAAGUAAUUCA -59
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