MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-876-v2

Family name MIR-876 (all species)
Seed GGAUUUC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-876
Paralogues Rno-Mir-876-v1 
Orthologues Bta-Mir-876-v2  Cfa-Mir-876-v2  Cja-Mir-876-v2  Cpo-Mir-876-v2  Dno-Mir-876-v2  Eca-Mir-876-v2  Ete-Mir-876  Hsa-Mir-876-v2  Laf-Mir-876-v2  Mml-Mir-876-v2  Mmr-Mir-876  Ocu-Mir-876-v2  Pab-Mir-876-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr5: 52461654-52461716 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-876-v2)		 Mir-876-v2 chr5: 52461654-52461716 [-] UCSC Ensembl
Mir-876-v1 chr5: 52461656-52461714 [-] UCSC Ensembl
Mir-873-v1 chr5: 52481085-52481143 [-] UCSC Ensembl
Mir-873-v2 chr5: 52481086-52481142 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACAAGCAUUACAUAAACUGUCAAGUGCUGUGGAUUUCUCUGUGAAUCACCAUAUCAAAUCUAAUGUGGUGGUGGUUUGCAAAGUAAUUCAUAGUGCUUCAUAGAUGCUCCUACAGUUGCUCU
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Structure
        10          20        30        40        50        60 
UACAAGCAUUACAUAAA--|   C   UG         U  C  UG        UAUCAAAU 
                   CUGU AAG  CUGUGGAUU CU UG  AAUCACCA        \
                   GAUA UUC  GAUACUUAA GA AC  UUGGUGGU        C
UCUCGUUGACAUCCUCGUA^   C   GU         U  A  GU        GGUGUAAU 
 120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-876-v2_5p
mirBase accessionMIMAT0012843
Sequence 
0- UGGAUUUCUCUGUGAAUCACCA -22
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Proposed targets microrna.org: MIMAT0012843
TargetScanVert: rno-miR-876
miRDB: MIMAT0012843
Star sequence

Rno-Mir-876-v2_3p*
mirBase accessionNone
Sequence 
41- GUGGUUUGCAAAGUAAUUCAUA -63
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