MirGeneDB ID | Pab-Mir-876-v2 |
Family name |
MIR-876 (all species) |
Seed |
GGAUUUC |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Mir-876-v1
|
Orthologues |
Bta-Mir-876-v2
Cfa-Mir-876-v2
Cja-Mir-876-v2
Cpo-Mir-876-v2
Dno-Mir-876-v2
Eca-Mir-876-v2
Ete-Mir-876
Hsa-Mir-876-v2
Laf-Mir-876-v2
Mml-Mir-876-v2
Mmr-Mir-876
Ocu-Mir-876-v2
Rno-Mir-876-v2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054692.2: 29163130-29163192 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCAGGCUUUACACAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAUCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACCAGGCUUUACACAAA--| UG U UAUCUAAG
CUGUGAAG CUGUGGAUU CUUUGUGAAUCACCA \
GACACUUC GAUACUUAA GAAACAUUUGGUGGU C
UCUAGUUGACGUCUUCGUG^ GU U GGUGUAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pab-Mir-876-v2_5p |
mirBase accession | None |
Sequence |
0- UGGAUUUCUUUGUGAAUCACCA -22
Get sequence
|
Star sequence |
Pab-Mir-876-v2_3p* |
mirBase accession | None |
Sequence |
41- GUGGUUUACAAAGUAAUUCAUA -63
Get sequence
|