| MirGeneDB ID | Pdu-Mir-2691-P4 |
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| Family name |
MIR-2691 (all species) |
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| Seed |
UUUGCAA |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
Pdu-Mir-2691-P1
Pdu-Mir-2691-P2a
Pdu-Mir-2691-P2b
Pdu-Mir-2691-P3
Pdu-Mir-2691-P5-v1
Pdu-Mir-2691-P5-v2
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| Orthologues |
Cte-Mir-2691
Efe-Mir-2691-P4
Snu-Mir-2691
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| Node of Origin (locus) |
P. dumerilii
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| Node of Origin (family) |
Sipuncula + Pleistoannelida
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000012.1: 26857283-26857341 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGACCCUACACGACCGAUGUGUGACCCCUUGGUGGCGAUUCUUUGCAGUCGUGUAAAAUGGAAGACGAUUUGCAAUGAAUCACUGCCCAGGGUUAGUACAACAACUCCUAUUACAAGAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGACCCUACACGACCGA-- -| CUU UG C U - UGUAAA
UGUG UGACCC GG G GAUUC UUGCAG UCG A
ACAU AUUGGG CC C CUAAG AACGUU AGC U
AAGAACAUUAUCCUCAACA G^ AC- GU A U U AGAAGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Star sequence |
Pdu-Mir-2691-P4_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GGUGGCGAUUCUUUGCAGUCG -21
Get sequence
|
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| Mature sequence |
Pdu-Mir-2691-P4_3p |
| mirBase accession | None |
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| Sequence |
37- AUUUGCAAUGAAUCACUGCCCA -59
Get sequence
|
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