MirGeneDB ID | Snu-Mir-2691 |
Family name |
MIR-2691 (all species) |
Seed |
UUUGCAA |
Species |
Peanut worm (Sipunculus nudus) |
MiRBase ID |
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Paralogues |
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Orthologues |
Cte-Mir-2691
Efe-Mir-2691-P1
Efe-Mir-2691-P2
Efe-Mir-2691-P3
Efe-Mir-2691-P4
Pdu-Mir-2691-P1
Pdu-Mir-2691-P2a
Pdu-Mir-2691-P2b
Pdu-Mir-2691-P3
Pdu-Mir-2691-P4
Pdu-Mir-2691-P5-v1
Pdu-Mir-2691-P5-v2
|
Node of Origin (locus) |
Sipuncula + Pleistoannelida
|
Node of Origin (family) |
Sipuncula + Pleistoannelida
|
Genome context (GCA_026874595.1_ASM2687459v1_Sipunculus_nudus) |
CM049322.1: 38553907-38553967 [+]
|
Precursor (pre-Mir +30nt flank) |
UGUCGCCAAGUUCACAUGCGCAGGACAUCCGCCAGUGAGACUUUUGCAAAACCGUGUAAACAUCUAGGUUUUGCAAAGUAUCACAGCCGGGUGAUCUGUUGCCAUGACAACAGAUAUGAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUCGCCAAGUUCACAU-- -| A CCA G U GUGUAA
GC GCAGG CAUCCG GUGA ACUUU GCAAAACC \
CG UGUCU GUGGGC CACU UGAAA CGUUUUGG A
AAAGUAUAGACAACAGUAC U^ A CGA A - AUCUAC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Snu-Mir-2691_5p* |
mirBase accession | None |
Sequence |
0- GCCAGUGAGACUUUUGCAAAACC -23
Get sequence
|
Mature sequence |
Snu-Mir-2691_3p |
mirBase accession | None |
Sequence |
38- UUUUGCAAAGUAUCACAGCCGGG -61
Get sequence
|