MirGeneDB ID | Pdu-Mir-2691-P5-v1 |
Family name |
MIR-2691 (all species) |
Seed |
UUUUGCA |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
Pdu-Mir-2691-P1
Pdu-Mir-2691-P2a
Pdu-Mir-2691-P2b
Pdu-Mir-2691-P3
Pdu-Mir-2691-P4
Pdu-Mir-2691-P5-v2
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Orthologues |
Cte-Mir-2691
Snu-Mir-2691
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Node of Origin (locus) |
P. dumerilii
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Node of Origin (family) |
Sipuncula + Pleistoannelida
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000027.1: 5652968-5653026 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGGAUGAAAGGAGAUUAGCUUGCCUUCCUCGGUAGCGAUUCCCUGACAAAAUCUUCAUAUAGUUAGAUUUUGCAUCGUAUCACUGCCGGAGAUGGUAUGAUUGUCGCUGAGGACGAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGGAUGAAAGGAGAUUAGCU--| U CU C UCCC A UCAU
UGCC UC CGGUAG GAU UG CAAAAUCU A
AUGG AG GCCGUC CUA AC GUUUUAGA U
AAAAGCAGGAGUCGCUGUUAGU^ U AG A UGCU - UUGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | No |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Star sequence |
Pdu-Mir-2691-P5-v1_5p* |
mirBase accession | None |
Sequence |
0- GGUAGCGAUUCCCUGACAAAAUCU -24
Get sequence
|
Mature sequence |
Pdu-Mir-2691-P5-v1_3p |
mirBase accession | None |
Sequence |
36- AUUUUGCAUCGUAUCACUGCCGG -59
Get sequence
|