MirGeneDB 3.0

MirGeneDB ID

Pdu-Mir-2691-P3

Family name MIR-2691 (all species)
Seed UUUGCAA
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-2691-P1  Pdu-Mir-2691-P2a  Pdu-Mir-2691-P2b  Pdu-Mir-2691-P4  Pdu-Mir-2691-P5-v1  Pdu-Mir-2691-P5-v2 
Orthologues Cte-Mir-2691  Efe-Mir-2691-P3  Snu-Mir-2691 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)
JAPTHN010000012.1: 16062901-16062959 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGAUUCCUAAGAUUCCGUAAGUGCUUCGGGCGAUGUCACAUUGCAGUCGUGUGUGUUUAAAAUCGAUUUGCAAUGUAUCACUGCCCGAGGAGCUUAUGCUUGCACCAAAAGAGGAAA
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Structure
        10          20        30        40         50        
CAAGAUUCCUAAGAUUC--       G         A  UC       -|    UGUGUG 
                   CGUAAGU CUUCGGGCG UG  ACAUUGC AGUCG      U
                   GUAUUCG GGAGCCCGU AC  UGUAACG UUAGC      U
AAAGGAGAAAACCACGUUC       A         C  UA       U^    UAAAAU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-2691-P3_5p* (predicted)

mirBase accessionNone
Sequence
0- GGCGAUGUCACAUUGCAGUCG -21
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Mature sequence

Pdu-Mir-2691-P3_3p

mirBase accessionNone
Sequence
37- AUUUGCAAUGUAUCACUGCCCG -59
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