MirGeneDB ID | Pma-Let-7-P2o15 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Sea Lamprey (Petromyzon marinus) |
MiRBase ID |
|
Paralogues |
Pma-Let-7-P1o1
Pma-Let-7-P2o13
Pma-Let-7-P2o14
Pma-Let-7-P2o16
Pma-Let-7-P2o17
Pma-Let-7-P2o18
Pma-Let-7-P2o19
Pma-Let-7-P2o20
|
Orthologues |
Aae-Let-7
Aga-Let-7
Agr-Let-7
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Egr-Let-7
Esc-Let-7
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Isc-Let-7
Lan-Let-7
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Mgi-Let-7
Mom-Let-7
Npo-Let-7
Obi-Let-7
Ofu-Let-7
Ovu-Let-7
Pau-Let-7
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rph-Let-7
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spu-Let-7
Sro-Let-7
Tca-Let-7
Tur-Let-7
War-Let-7
Xbo-Let-7
|
Node of Origin (locus) |
P. marinus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046098.1: 6021517-6021585 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGGAUGGACGGUGUGGCGUGGGCUGUGCGAUGAGGUAGUAGGUUGUAUAGUUUUUUGGGUGCAAUCCCAAACGGGUAACUGUACAAUCUACUGUCUUUCCCACGGCUUCACAAAACUGCUCCUCAUCCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGGAUGGACGGUGUGGC- -| C U GU UUUUGGGUGCA
GUG GGCUGUG GA GAG AGUAGGUUGUAUAGUU A
CAC UCGGCAC CU UUC UCAUCUAACAUGUCAA U
UCCUACUCCUCGUCAAAA U^ C - UG UGGGCAAACCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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Mature sequence |
Pma-Let-7-P2o15_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
|
Star sequence |
Pma-Let-7-P2o15_3p* |
mirBase accession | None |
Sequence |
48- CUGUACAAUCUACUGUCUUUC -69
Get sequence
|