Let-7-P2o20

MirGeneDB ID

Pma-Let-7-P2o20

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Let-7-P1o1 Pma-Let-7-P2o13 Pma-Let-7-P2o14 Pma-Let-7-P2o15 Pma-Let-7-P2o16 Pma-Let-7-P2o17 Pma-Let-7-P2o18 Pma-Let-7-P2o19

Orthologues

Aae-Let-7 Aga-Let-7 Agr-Let-7 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Egr-Let-7 Esc-Let-7 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Isc-Let-7 Lan-Let-7 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Mgi-Let-7 Mom-Let-7 Npo-Let-7 Obi-Let-7 Ofu-Let-7 Ovu-Let-7 Pau-Let-7 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rph-Let-7 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spu-Let-7 Sro-Let-7 Tca-Let-7 Tur-Let-7 War-Let-7 Xbo-Let-7

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046116.1: 8596307-8596384 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGAGGAUCAGCACGAACCGCGCCGGCUGGAUGAGGUAGUAGGUUAUAUUGUUUUUCGGCAGUGAUUUUGCCGCGUUUUUGGAGAUAACUCUAUAACCUACUGCCUUCCCGGCCGAGUGGGGAACAGCAGCAUGAGCCC

Get precursor sequence

Structure

        10         20         30        40        50        60         
CGAGGAUCAGCACGAAC- G   -|      AU                UU   UUUCGGCAGUGAUUUU 
                  C CGC CGGCUGG  GAGGUAGUAGGUUAUA  GUU                \
                  G GUG GCCGGCC  UUCCGUCAUCCAAUAU  CAA                G
CCCGAGUACGACGACAAG G   A^      C-                CU   UAGAGGUUUUUGCGCC 
      130       120       110        100        90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Let-7-P2o20_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGGUUAUAUUGUU -22

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Star sequence

Pma-Let-7-P2o20_3p* (predicted)

mirBase accession

None

Sequence

57- CUCUAUAACCUACUGCCUUCC -78

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