MirGeneDB 3.0
MirGeneDB ID

Pma-Let-7-P2o13

Family name LET-7 (all species)
Seed GAGGUAG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-let-7a-2
Paralogues Pma-Let-7-P1o1  Pma-Let-7-P2o14  Pma-Let-7-P2o15  Pma-Let-7-P2o16  Pma-Let-7-P2o17  Pma-Let-7-P2o18  Pma-Let-7-P2o19  Pma-Let-7-P2o20 
Orthologues Aae-Let-7  Aga-Let-7  Agr-Let-7  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Egr-Let-7  Esc-Let-7  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Mgi-Let-7  Mom-Let-7  Npo-Let-7  Obi-Let-7  Ofu-Let-7  Ovu-Let-7  Pau-Let-7  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rph-Let-7  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spu-Let-7  Sro-Let-7  Tca-Let-7  Tur-Let-7  War-Let-7  Xbo-Let-7 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046114.1: 5799374-5799444 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2o13)		 Let-7-P2o14 NC_046114.1: 5797939-5798018 [-] UCSC Ensembl
Let-7-P2o13 NC_046114.1: 5799374-5799444 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGAAGAGGAGCGAUGAGUGCGCCCUGGGAUGAGGUAGUAGGUUGUAUAGUUUCAGGGUCACACCCAAACUGGGAGUUAACUGUACAAUCUACUCUCUUUCCCAAGGCGGCACGCUGUCUGCCGGCUCUCC
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Structure
        10         20         30        40        50        60     
ACGAAGAGGAGCGAUGA-   -|   C     U   GU                UCAGGGUCACAC 
                  GUG CGCC UGGGA GAG  AGUAGGUUGUAUAGUU            C
                  CAC GCGG ACCCU UUC  UCAUCUAACAUGUCAA            C
CCUCUCGGCCGUCUGUCG   G^   A     -   UC                UUGAGGGUCAAA 
 .       120       110       100         90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Let-7-P2o13_5p
mirBase accessionMIMAT0019564
Sequence 
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Pma-Let-7-P2o13_3p* (predicted)
mirBase accessionNone
Sequence 
50- CUGUACAAUCUACUCUCUUUC -71
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