MirGeneDB 2.1
MirGeneDB ID

Pma-Let-7-P2o18

Family name LET-7 (all species)
Seed GAGGUAG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-let-7d
Paralogues Pma-Let-7-P1o1  Pma-Let-7-P2o13  Pma-Let-7-P2o14  Pma-Let-7-P2o15  Pma-Let-7-P2o16  Pma-Let-7-P2o17  Pma-Let-7-P2o19  Pma-Let-7-P2o20 
Orthologues Aae-Let-7  Bge-Let-7  Bpl-Let-7  Cgi-Let-7  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Hme-Let-7  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Npo-Let-7  Obi-Let-7  Ovu-Let-7  Pfl-Let-7  Pmi-Let-7  Sko-Let-7  Spu-Let-7  Tca-Let-7  Xbo-Let-7 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046082.1: 2081955-2082034 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2o18)		 Let-7-P2o17 NC_046082.1: 2075146-2075217 [+] UCSC Ensembl
Let-7-P2o18 NC_046082.1: 2081955-2082034 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUCGGUGGUCACUGUUGUGUCGGUGAGGUGAGGUAGUAGGUUGUAAAGUUGUAGGGUGUCAUUUGUUUACACCCGAUUUGGAGAUAACUGUACAACCUAUUGCCUUCCUCGCCACACAGCCAGUCAGCAAAUCUGUGC
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Structure
        10           20        30        40        50        60          
UCAUCGGUGGUCACUGU---|    C       U                A    GUAGGGUGUCAUUUGUU 
                    UGUGU GGUGAGG GAGGUAGUAGGUUGUA AGUU                 \
                    ACACA CCGCUCC UUCCGUUAUCCAACAU UCAA                 U
CGUGUCUAAACGACUGACCG^    -       -                G    UAGAGGUUUAGCCCACA 
.       130       120        110        100        90        80
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Let-7-P2o18_5p
mirBase accessionMIMAT0019568
Sequence 
0- UGAGGUAGUAGGUUGUAAAGUU -22
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Star sequence

Pma-Let-7-P2o18_3p*
mirBase accessionNone
Sequence 
59- CUGUACAACCUAUUGCCUUCC -80
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