Let-7-P2o18

MirGeneDB ID

Pma-Let-7-P2o18

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-let-7d

Paralogues

Pma-Let-7-P1o1 Pma-Let-7-P2o13 Pma-Let-7-P2o14 Pma-Let-7-P2o15 Pma-Let-7-P2o16 Pma-Let-7-P2o17 Pma-Let-7-P2o19 Pma-Let-7-P2o20

Orthologues

Aae-Let-7 Aga-Let-7 Agr-Let-7 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Egr-Let-7 Esc-Let-7 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Isc-Let-7 Lan-Let-7 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Mgi-Let-7 Mom-Let-7 Npo-Let-7 Obi-Let-7 Ofu-Let-7 Ovu-Let-7 Pau-Let-7 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rph-Let-7 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spu-Let-7 Sro-Let-7 Tca-Let-7 Tur-Let-7 War-Let-7 Xbo-Let-7

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046082.1: 2081955-2082034 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2o18)

Let-7-P2o17 NC_046082.1: 2075146-2075217 [+] UCSC Ensembl
Let-7-P2o18 NC_046082.1: 2081955-2082034 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAUCGGUGGUCACUGUUGUGUCGGUGAGGUGAGGUAGUAGGUUGUAAAGUUGUAGGGUGUCAUUUGUUUACACCCGAUUUGGAGAUAACUGUACAACCUAUUGCCUUCCUCGCCACACAGCCAGUCAGCAAAUCUGUGC

Get precursor sequence

Structure

        10           20        30        40        50        60          
UCAUCGGUGGUCACUGU---|    C       U                A    GUAGGGUGUCAUUUGUU 
                    UGUGU GGUGAGG GAGGUAGUAGGUUGUA AGUU                 \
                    ACACA CCGCUCC UUCCGUUAUCCAACAU UCAA                 U
CGUGUCUAAACGACUGACCG^    -       -                G    UAGAGGUUUAGCCCACA 
.       130       120        110        100        90        80

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Let-7-P2o18_5p

mirBase accession

MIMAT0019568

Sequence

0- UGAGGUAGUAGGUUGUAAAGUU -22

Get sequence

Star sequence

Pma-Let-7-P2o18_3p*

mirBase accession

None

Sequence

59- CUGUACAACCUAUUGCCUUCC -80

Get sequence