| MirGeneDB ID | Sme-Mir-87-o10 |
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| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-mir-87c
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| Paralogues |
Sme-Mir-87-o8
Sme-Mir-87-o9
Sme-Mir-87-o11
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
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| Node of Origin (locus) |
S. mediterranea
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| Node of Origin (family) |
Protostomia
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000019_dd_Smes_g4_19: 1464537-1464595 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUUUUAUUUGUUCUCGGCUCGUGUCGCAGUCAAUUGAUAAUGGGCCCCAGCCAUUCCAGGCGAAUGAUGAGCAAAUUAUCAAUUGACUUUCCAUGGCCAUUGUCAUCUGGCAGGGUGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUUUUUAUUUGUUCUCG----| U UCGC GG CC GC UUCCA
GC CGUG AGUCAAUUGAUAAU GC CA CA \
CG GUAC UCAGUUAACUAUUA CG GU GU G
UGUGGGACGGUCUACUGUUAC^ - CUU- AA A- A- AAGCG
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
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| Star sequence |
Sme-Mir-87-o10_5p* |
| mirBase accession | MIMAT0012133 |
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| Sequence |
0- UCAAUUGAUAAUGGGCCCCAGCCA -24
Get sequence
|
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| Mature sequence |
Sme-Mir-87-o10_3p |
| mirBase accession | MIMAT0011228 |
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| Sequence |
37- AUGAGCAAAUUAUCAAUUGACU -59
Get sequence
|
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