MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-87-o8

Family name MIR-87 (all species)
Seed CACUUGG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-87a
Paralogues Sme-Mir-87-o9  Sme-Mir-87-o10  Sme-Mir-87-o11 
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000072_dd_Smes_g4_72: 3052486-3052550 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUUGUUUGAUGAUUUUGCCAGUAUUUCAACACUUGGUAAUUUGCUCAAACCAAUGUCCGAAAAGGAGUCUGGUGAGCAAAGUUUCAAGUGUAUAUAUGUGGCAUUAAACCAUUGACUGUGACC
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Structure
        10           20         30        40        50        60   
AAAUUGUUUGAUGAUUU---     -|   UUCA        UAA       AA    AUGUCCGA 
                    UGCCA GUAU    ACACUUGG   UUUGCUC  ACCA        \
                    ACGGU UAUA    UGUGAACU   AAACGAG  UGGU        A
CCAGUGUCAGUUACCAAAUU     G^   UA--        UUG       --    CUGAGGAA 
   120       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-87-o8_5p
mirBase accessionMIMAT0012109
Sequence 
0- ACACUUGGUAAUUUGCUCAAACCA -24
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Co-mature sequence

Sme-Mir-87-o8_3p
mirBase accessionMIMAT0003989
Sequence 
43- GUGAGCAAAGUUUCAAGUGUAU -65
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