MirGeneDB ID | Sme-Mir-87-o11 |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-mir-87d
|
Paralogues |
Sme-Mir-87-o8
Sme-Mir-87-o9
Sme-Mir-87-o10
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Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
Node of Origin (locus) |
S. mediterranea
|
Node of Origin (family) |
Protostomia
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000320_dd_Smes_g4_320: 69423-69485 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGUCCAUUUUACAUUGUUUUAGAAUUAUAAUGUCUUAUAUUUUGCUAUUAUCAUUGUUUCAAUGAAAAUGGUGAGCAAAGUUUAAGACAUUCAUAUUUUGAAAUUUUCUUCCUUGAAAAUAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUGUCCAUUUUACAUUG--| UAU U AU UUGUUUC
UUUUAGAAU AAUGUCUUA AUUUUGCU UAUCA \
AAAGUUUUA UUACAGAAU UGAAACGA GUGGU A
AAUAAAAGUUCCUUCUUUU^ UAC U -- AAAAGUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
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Star sequence |
Sme-Mir-87-o11_5p* |
mirBase accession | MIMAT0012136 |
Sequence |
0- AUGUCUUAUAUUUUGCUAUUAUCA -24
Get sequence
|
Mature sequence |
Sme-Mir-87-o11_3p |
mirBase accession | MIMAT0011235 |
Sequence |
41- GUGAGCAAAGUUUAAGACAUUC -63
Get sequence
|