MirGeneDB 3.0

MirGeneDB ID

Sme-Mir-87-o11

Family name MIR-87 (all species)
Seed UGAGCAA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-87d
Paralogues Sme-Mir-87-o8  Sme-Mir-87-o9  Sme-Mir-87-o10 
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000320_dd_Smes_g4_320: 69423-69485 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGUCCAUUUUACAUUGUUUUAGAAUUAUAAUGUCUUAUAUUUUGCUAUUAUCAUUGUUUCAAUGAAAAUGGUGAGCAAAGUUUAAGACAUUCAUAUUUUGAAAUUUUCUUCCUUGAAAAUAA
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Structure
        10          20        30        40        50        60  
UUGUCCAUUUUACAUUG--|        UAU         U        AU     UUGUUUC 
                   UUUUAGAAU   AAUGUCUUA AUUUUGCU  UAUCA       \
                   AAAGUUUUA   UUACAGAAU UGAAACGA  GUGGU       A
AAUAAAAGUUCCUUCUUUU^        UAC         U        --     AAAAGUA 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-87-o11_5p*

mirBase accessionMIMAT0012136
Sequence
0- AUGUCUUAUAUUUUGCUAUUAUCA -24
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Mature sequence

Sme-Mir-87-o11_3p

mirBase accessionMIMAT0011235
Sequence
41- GUGAGCAAAGUUUAAGACAUUC -63
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