| MirGeneDB ID | Aga-Mir-989 |
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| Family name |
MIR-989 (all species) |
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| Seed |
GUGAUGU |
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| Species |
African malaria mosquito (Anopheles gambiae) |
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| MiRBase ID |
aga-mir-989
|
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| Paralogues |
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| Orthologues |
Aae-Mir-989
Dan-Mir-989
Dme-Mir-989
Dmo-Mir-989
Dsi-Mir-989
Dya-Mir-989
Gpa-Mir-989
Hme-Mir-989-P1
Hme-Mir-989-P2
Tca-Mir-989
|
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| Node of Origin (locus) |
Aparaglossata
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| Node of Origin (family) |
Aparaglossata
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Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic) |
NC_064602.1: 58728208-58728294 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUUACGGACAGUACAGUGGCCACGGGGGUACGCCGCUACGUUGCUUUCACUUGGUACGCUCGUAUAGUAUAGAGCUAAAAGUAAACAUAGAUCCAUGUGAUGUGACGUAGUGGUACCCUCCCGUGUCUAUCACAACAUGCCCGUUGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60 70
GUUACGGACAGUACAGU--| C UAC UG UU U GUACGCUCGUAUAGUAUAG
GG CACGGGGG GCCGCUACGU C UCAC UG A
UC GUGCCCUC UGGUGAUGCA G AGUG AC G
AGUUGCCCGUACAACACUA^ U CCA GU U- U CUAGAUACAAAUGAAAAUC
140 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Star sequence |
Aga-Mir-989_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGCCGCUACGUUGCUUUCACUUG -23
Get sequence
|
|---|
| Mature sequence |
Aga-Mir-989_3p |
| mirBase accession | MIMAT0005529 |
|---|
| Sequence |
65- UGUGAUGUGACGUAGUGGUACC -87
Get sequence
|
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