MirGeneDB 3.0

MirGeneDB ID

Dsi-Mir-989

Family name MIR-989 (all species)
Seed GUGAUGU
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-989
Paralogues
Orthologues Aae-Mir-989  Aga-Mir-989  Dan-Mir-989  Dlo-Mir-989  Dme-Mir-989  Dmo-Mir-989  Dya-Mir-989  Gpa-Mir-989  Hme-Mir-989-P1  Hme-Mir-989-P2  Tca-Mir-989 
Node of Origin (locus) Endopterygota
Node of Origin (family) Endopterygota
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)
2R: 10739800-10739943 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-989)
Mir-989 2R: 10739800-10739943 [-] UCSC Ensembl
Mir-2584 2R: 10767146-10767208 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUAUUUAAGUACAUAAAUUCCGGGAAUCGGCCACUACCUUGCAGUCACGUGAUGAAAAGACACUGGUGACACUGAUCCGGAUUUGGUAGUUGACAAAUCCUCCAUGCCGAGAUAAGUUUCAUUUUGCGUCUUUUGAAUUCGAAUAGUUCAUGUGAUGUGACGUAGUGGAACAUACCUGAAAUUGCAAGCAACACGAAGUGAA
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Structure
        10          20        30        40        50        60        70        80        90       100  
UUUUAUUUAAGUACAUA--|   C    A  CGG       C UG  G       AUGAAAAGACACUGGUGACACUGAUCCGGAUUUGGUAGUUGACAAAUC 
                   AAUU CGGG AU   CCACUAC U  CA UCACGUG                                                \
                   UUAA GUCC UA   GGUGAUG A  GU AGUGUAC                                                C
AAGUGAAGCACAACGAACG^   A    A  CAA       C GU  -       UUGAUAAGCUUAAGUUUUCUGCGUUUUACUUUGAAUAGAGCCGUACCU 
  200       190       180       170       160        150       140       130       120       110
Deep sequencing
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CommentThe mirbase entry is incomplete at the 5' end.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Wh
Star sequence

Dsi-Mir-989_5p*

mirBase accessionNone
Sequence
0- GGCCACUACCUUGCAGUCACGUG -23
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Mature sequence

Dsi-Mir-989_3p

mirBase accessionMIMAT0012497
Sequence
122- UGUGAUGUGACGUAGUGGAACA -144
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