MirGeneDB ID | Hme-Mir-989-P1 |
Family name |
MIR-989 (all species) |
Seed |
GUGAUGU |
Species |
Longwing butterfly (Heliconius melpomene) |
MiRBase ID |
|
Paralogues |
Hme-Mir-989-P2
|
Orthologues |
Aae-Mir-989
Aga-Mir-989
Dan-Mir-989
Dlo-Mir-989
Dme-Mir-989
Dmo-Mir-989
Dsi-Mir-989
Dya-Mir-989
Gpa-Mir-989
Tca-Mir-989
|
Node of Origin (locus) |
H. melpomene
|
Node of Origin (family) |
Endopterygota
|
Genome context (Hmel_1) |
FARY01123984.1: 1726-1785 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCAUUACCUCACAGUCACGUGGUCUCUGCGGUACAACGUGUGAUGUGACGUAGUGGAAGUCUCGACCUGGAUAUACAACAUUAGCUUAG
Get precursor sequence
|
Structure | 10 20 30 40 50
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG-- C GU-| GGUCUCU
CCAUUAC UCACA CACGU \
GGUGAUG AGUGU GUGCA G
GAUUCGAUUACAACAUAUAGGUCCAGCUCUGAA C AGU^ ACAUGGC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Hme-Mir-989-P1_5p* |
mirBase accession | None |
Sequence |
0- GCCAUUACCUCACAGUCACGUG -22
Get sequence
|
Mature sequence |
Hme-Mir-989-P1_3p |
mirBase accession | None |
Sequence |
39- UGUGAUGUGACGUAGUGGAAG -60
Get sequence
|